IGV-Reports Example

Report generated with the following command:

    create_report test/data/variants/variants.vcf.gz \
    --genome hg38 \
    --flanking 1000 \
    --info-columns GENE TISSUE TUMOR COSMIC_ID GENE SOMATIC \
    --samples reads_1_fastq \
    --sample-columns DP GQ \
    --tracks test/data/variants/variants.vcf.gz test/data/variants/recalibrated.bam test/data/hg38/refGene.txt.gz \
    --title "IGV Variant Inspector" \
    --header test/example_header.html \
    --footer test/example_footer.html \
    --output example_vcf.html